PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG079800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 386aa    MW: 39424.6 Da    PI: 9.868
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG079800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.13.9e-35661882126
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsss 87 
                           g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a  ai++l+ +++ +  +     e      ++ +++ 
  Pavir.9NG079800.1.p  66 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIDKLPALDTAAFAALpgpaE---ADAAKVKQQL 152
                          689*************************************************************4444433343221...2222111122 PP

                  TCP  88 gkaaksaakskksqksaasalnlak.esrakarararert 126
                              +s+  s++s++s+ s l+l++ +sr    a ar+r+
  Pavir.9NG079800.1.p 153 ---GSSSGGSSPSETSKGSELSLSRsDSR-GGAAAARDRE 188
                          ...22333445555555555777774444.3333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3467195IPR005333Transcription factor, TCP
PROSITE profilePS5136932.7768126IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEAVGDGAAA GAGDGAPPGR SQQGAKRGRG GGVRGGEAEA AWGLPPALPP PQGPGAGSRI  60
YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ DRLGFDQPSK AIEWLINAAS  120
DAIDKLPALD TAAFAALPGP AEADAAKVKQ QLGSSSGGSS PSETSKGSEL SLSRSDSRGG  180
AAAARDREVT VASTSAQAAS FTELLTGVAS SGAISAAEHK QSWQQQQPSA SAAAAADCVG  240
IARPGKGAHG LSTHAFSGPI KFGNAPPFGM VPAQPFNFTS HVEMPHFSLG QDALVASSPP  300
AAGDYSLNFS MSSGFLGTNR GTLQSNSQSN FSGHHHQQLQ RLDGPFLFGH AAAAHPASEN  360
QLAASAALQL WDGFRHSGMK EKSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2673127155Putative transcription factor PCF6
5zkt_B3e-2673127155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.175340.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG079800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565950.0EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466344.10.0transcription factor PCF6
SwissprotA2XMN11e-114PCF6_ORYSI; Transcription factor PCF6
SwissprotQ10CE81e-114PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A3L6TG380.0A0A3L6TG38_PANMI; Uncharacterized protein
STRINGPavir.Ia00505.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.22e-35TCP family protein