PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG518500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 233aa    MW: 25708.1 Da    PI: 11.1772
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG518500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.3e-10166189326
                          XXCHHHCHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKka 26 
                          elk err q+NRe+ArrsR+RK++
  Pavir.9KG518500.1.p 166 ELKSERRNQSNRESARRSRLRKQE 189
                          79*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.4E-7162197No hitNo description
PfamPF001702.4E-7166189IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.94E-5168199No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCSLRTRNGL RRCRPATPPV GSLTPGTPRR YRRCPRFGFV QNVPYTAGEP VAAPEGKSKR  60
KSSGAPSVGN ASRSSDGRSE ETSDKRYASV EHKLLPSAKR RMSTGANCLT TVTFQASHLR  120
LQQCKRRSAG KLLVSTTEMA AISNARPNLN IGLDLWSNSL VKDDGELKSE RRNQSNRESA  180
RRSRLRKQEL DQKGEMEQAE EPSVVTTLSM HIEKAKVHHG KSDQHRCKKV GA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180186RRSRLRK
2180187RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.354629e-34callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG518500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981331.13e-61DNA-binding protein EMBP-1 isoform X2
RefseqXP_022679229.13e-61DNA-binding protein EMBP-1 isoform X1
TrEMBLA0A3L6TLH81e-59A0A3L6TLH8_PANMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.13e-12G-box binding factor 1