![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.9KG518500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 233aa MW: 25708.1 Da PI: 11.1772 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.6 | 7.3e-10 | 166 | 189 | 3 | 26 |
XXCHHHCHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKka 26 elk err q+NRe+ArrsR+RK++ Pavir.9KG518500.1.p 166 ELKSERRNQSNRESARRSRLRKQE 189 79*********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.4E-7 | 162 | 197 | No hit | No description |
Pfam | PF00170 | 2.4E-7 | 166 | 189 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.94E-5 | 168 | 199 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 171 | 186 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MCSLRTRNGL RRCRPATPPV GSLTPGTPRR YRRCPRFGFV QNVPYTAGEP VAAPEGKSKR 60 KSSGAPSVGN ASRSSDGRSE ETSDKRYASV EHKLLPSAKR RMSTGANCLT TVTFQASHLR 120 LQQCKRRSAG KLLVSTTEMA AISNARPNLN IGLDLWSNSL VKDDGELKSE RRNQSNRESA 180 RRSRLRKQEL DQKGEMEQAE EPSVVTTLSM HIEKAKVHHG KSDQHRCKKV GA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 180 | 186 | RRSRLRK |
2 | 180 | 187 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.35462 | 9e-34 | callus |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.9KG518500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981331.1 | 3e-61 | DNA-binding protein EMBP-1 isoform X2 | ||||
Refseq | XP_022679229.1 | 3e-61 | DNA-binding protein EMBP-1 isoform X1 | ||||
TrEMBL | A0A3L6TLH8 | 1e-59 | A0A3L6TLH8_PANMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2160 | 36 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36730.1 | 3e-12 | G-box binding factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.9KG518500.1.p |