PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG411800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 361aa    MW: 38711.6 Da    PI: 6.0061
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG411800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.11.1e-3256155297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqk 87 
                          lfqrlw++eDeiv+L+++ +f+a++g+   +++ d++ fye ++++++  ++k+qlveKirrLK+K++++v++ +  g  ++f+++h+q 
  Pavir.9KG411800.1.p  56 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAAFTFRSPHEQA 145
                          79*************************8867778***************************************8889************* PP

               DUF573  88 ifelskkiWg 97 
                          ife+++ iW+
  Pavir.9KG411800.1.p 146 IFEIARTIWR 155
                          *********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-3057154IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAGA GERRPLFQRL  60
WTDEDEIVIL RAFAEFTAQR GTSFASHQYD TTPFYEDMRR RLHTGFTKNQ LVEKIRRLKR  120
KYRNCVERLR VAGAAFTFRS PHEQAIFEIA RTIWRPDSDK HGRDSDDEAA ANAHDGPLAL  180
DANGGDSTKS PTSRPRRGGR RRRTADFPAD AAAETLALPP PPMPVMPEDA LPSFPAAGMP  240
AMDAGVGVGS ISMDPAAGLP AAMSAAVTGG STAENPILAA LFKEMVRAML SIGGGVTAAP  300
LGLEPPPAIA GMPMEGEKWR QQRIRELEVY LRRIDLLQDQ ARAALEELRS APQGRGGMNT  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG411800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645991e-176BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBankEU9721161e-176EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.10.0probable transcription factor At3g04930
TrEMBLA0A2T7CC960.0A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R30.0A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGPavir.J23796.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-32DNA-binding storekeeper protein-related transcriptional regulator