PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG111200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 283aa    MW: 28699.8 Da    PI: 8.7794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG111200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001190112123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C + F ++  L  H++ H
  Pavir.9KG111200.2.p  90 FKCNYCQRKFYTSQALGGHQNAH 112
                          89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.16E-787117No hitNo description
PROSITE profilePS5015711.57290117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDKESSSLTA SMEVEGAGLQ VEDGEEVVQA PAKELDLIGA LGSAPPEVKA VEAQAVAPGK  60
GKEKAVVEAA EEKAPTTAPA SSGGEKKRSF KCNYCQRKFY TSQALGGHQN AHKRERSLAK  120
HAAAAAAAAG RGLYGGADPF LPPHHLRFPH AWPYSAGGGG GRTSSSSSLG LGRGSAAAAP  180
FYGRQHGWAA HAHAHGGQPS MPGLARHAGA ERPVYAPHGY GGYGASSRAP ASPAVLDTGM  240
AGLRWAGVAS GASAGVNNGG AHDVTQQQEE AQSCKIDLNL RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG111200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822315.11e-136zinc finger protein GIS3-like
TrEMBLA0A2S3I1W91e-135A0A2S3I1W9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D5Q31e-135A0A2T7D5Q3_9POAL; Uncharacterized protein
STRINGPavir.Ib04043.1.p1e-170(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.19e-16zinc finger protein 4