PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG101100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 74aa    MW: 8234.39 Da    PI: 9.8836
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-065270220
                         EETTTTEEESSHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
                          C+ Cg++++ + nLk Hi
  Pavir.9KG101100.1.p 52 ACKRCGRCYTGQANLKAHI 70
                         6*****************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MVPARGRSPS PARRRNRHEG TAGVHAQVLL EAGNLVEEED AHLRKHLGKW WACKRCGRCY  60
TGQANLKAHI CDY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.46061e-121callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG101100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ib03955.1.p7e-48(Panicum virgatum)