PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG100000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 234aa    MW: 26114.1 Da    PI: 8.4865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG100000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-151682274099
                          ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                   B3  40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                             g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F l+++ +e +++v+++++
  Pavir.9KG100000.1.p 168 ECMGKTWKTQMVIHNGRRW-FLNGGWAKFARDNGLRVGDICLFDLKKNaRELTMNVHIISR 227
                          4479*******77777766.6999**********************999*********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-21123227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-18123226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-17128226No hitNo description
SMARTSM010195.9E-5130228IPR003340B3 DNA binding domain
PfamPF023628.6E-14163227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041171228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MPVERTCLWG SHDFVRENHV QEGDICLLFP AEGGRRYTYT IYLLCASATH SIGRAGFQIV  60
CPCPGRSSAK MASEVHIMEE TTNDETLDSE DSGGSSPPLY IVPCRNYLSK SQKKIVEERV  120
RVIQSKVPIC VAVMKNNNVG DAQKWMLELG VRYAAVHLPA SGQAVALECM GKTWKTQMVI  180
HNGRRWFLNG GWAKFARDNG LRVGDICLFD LKKNARELTM NVHIISREQL SLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.375681e-107callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG100000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.11e-157B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV226e-55Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2S3IK441e-158A0A2S3IK44_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]