PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG096600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 261aa    MW: 29559.1 Da    PI: 5.118
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG096600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1751136498
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++   +++ ++ +++p +f++++ g+   s  + +e+++g+++ vk+   k+ +++vl+ GW+eF +a+++ke+D+++F+++++s+f  +
  Pavir.9KG096600.1.p  51 QM---SANYRRSMIIPDRFMNHFRGE--LSESIEIESPDGNVYGVKV--IKHMDKIVLQCGWEEFIDAHHIKENDSLLFQHIENSRF--K 131
                          44...44445569*******777766..6678***************..*********************************99999..7 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v +++
  Pavir.9KG096600.1.p 132 VLILD 136
                          77766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-2141140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2044140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.81645138IPR003340B3 DNA binding domain
SMARTSM010197.6E-1148138IPR003340B3 DNA binding domain
CDDcd100174.24E-1849136No hitNo description
PfamPF023624.9E-1650136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFAELGYIES LSSFSERVNI SGHGSRMKKS CVCCQRYMDH LDGKMKCFLS QMSANYRRSM  60
IIPDRFMNHF RGELSESIEI ESPDGNVYGV KVIKHMDKIV LQCGWEEFID AHHIKENDSL  120
LFQHIENSRF KVLILDSDGC EKVFSCSGIK TTTIAQEQAA EYVDISDTAH DYTKKFSGIR  180
KRSTSCQRVT QNHRRKVAKV ASAASSCEES GQDTEGTAGY ESSFDLDDTE TNPEPDYVLS  240
RISNLSEEQE EKVEELIKEI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG096600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791593.11e-145B3 domain-containing protein Os03g0620400-like
SwissprotQ851W52e-83Y3204_ORYSJ; B3 domain-containing protein Os03g0620400
TrEMBLA0A2T7C3P11e-155A0A2T7C3P1_9POAL; Uncharacterized protein
STRINGPavir.Ib03965.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-14B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]