PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG275300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 594aa    MW: 66484.1 Da    PI: 4.7805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG275300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012274297223
                          EETTTT.EEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCg.ksFsrksnLkrHirt.H 23 
                           Cp+C+ k+F ++ +L +H+   H
  Pavir.8NG275300.1.p 274 ICPICDrKRFVDSGLLLSHMCGkH 297
                          7*******************8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.103.2E-5237IPR011990Tetratricopeptide-like helical domain
Gene3DG3DSA:1.25.40.103.2E-5124181IPR011990Tetratricopeptide-like helical domain
PfamPF047803.4E-12220316IPR006865Domain of unknown function DUF629
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MYAEAEAEFR RALSIPNPSD PALHNAAYGM YEGYEHERDP AFVAERVEEA RERARGSYAR  60
MTVEELVPSA VQRVLEAGKL LGAAEGRKRG KLVAETFPNL ARAQYLHAYM DLEFVRSLDP  120
AIDKRPFLRR TLTVADRLAR AFPRSPVIAC FRAKLLFILG EYDAAERECR RALDMKEPDD  180
PQLDCIPVGS ISGENLGARL VSLACEFHEL INKILMVAAD YWDSMSGERR HDSFLRVRSD  240
VLQDEYSKVD PLCAFTMSDV RSFVREHKSW KFWICPICDR KRFVDSGLLL SHMCGKHPRA  300
VLPRLQSLLD QALSSEASEE GGFLDGVTFC EDSAEQDMIC LNKSSVVFKW LFYAPSSGVG  360
AKPLPEVRAK KREKGCMILE GIKEKMRTLP TDKSSTEFAE ALPRIQELWH NFLKASMLDY  420
RGVILELARS FLWRELKKCM TEDPQLAAKR ISATDIDAIF TTEAEPSHAE GDHETGGNEQ  480
PSQADGALIV SEDHKESKVP IEHGESSETP ANNTELTDLV TSVAESGNDL YATLDKLDID  540
PKINENNQES EFQVEGESSE ATVTNMADPA TSMAESGNDL DVKLENLQIN RNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368374AKKREKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG275300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791203.10.0uncharacterized protein LOC112872314
TrEMBLA0A2T7CPX30.0A0A2T7CPX3_9POAL; Uncharacterized protein
STRINGPavir.J27150.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138944