PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8NG252900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 300aa    MW: 34235.4 Da    PI: 7.8249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8NG252900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00041103125223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+++++++ +L  H +  H
  Pavir.8NG252900.1.p 103 SCSVCSRVYPTSRLLSIHVSEaH 125
                          6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.575100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028077100IPR007087Zinc finger, C2H2
SMARTSM003555.4102125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
SMARTSM003550.4140165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQQRPEDAME EVEAEAAAGP ELGFWLAARR RLAPDDPFFA AGDLERELLA KHVALDLSED  60
DRNQLEKMEV ASTTLFCPIA GCGAHLDCLE DFEDHYVTRH TASCSVCSRV YPTSRLLSIH  120
VSEAHDSYFQ AKVARGFPMY ECLVEGCGVK LKSYKSRRQH LIDKHQFPKS FEFFKKARPS  180
QRQRQKSQRR QTAHKGEETR DNSMNVDGKG TRQTNWRYRP KQHDHKELKE NECQHKEAKE  240
NEMEVEQKID ELTSAVSKLS TAESTPADIT FGHRRSRGLT FVPRSIRQSK QAASQPEAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.55700.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8NG252900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826617.10.0zinc finger protein 511
TrEMBLA0A3L6PG640.0A0A3L6PG64_PANMI; Uncharacterized protein
STRINGPavir.Ha00588.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.19e-92zinc ion binding;nucleic acid binding;zinc ion binding