PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG366700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 242aa    MW: 26936.2 Da    PI: 5.0146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG366700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-111802201055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.8KG366700.1.p 180 KKRRERINERLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 220
                          9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-15167233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14168230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.612170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-12179224No hitNo description
PfamPF000105.4E-9180220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEAKGASIWS EESEMIAHLQ SMFWNSSDAD VSLSSPNSST SSCIEPSTLP TALFLPFNEK  60
ESYDTAPLQN AATDWCFDHQ SESFGSIDTA VTGDKRALLM DERRKKSNKK PRIVAPVLMT  120
TSSALDDKAN TELINISSSW CCSSEDDSIG VCEESVVLKQ SCSSRGRSRS SKNSQSLYAK  180
KRRERINERL KTLQQLIPNG TKVDMSTMLE EAVQYVKFLQ LQIKLLSSDE TWMYAPQPLE  240
H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179190KKRRERINERLK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG366700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826894.11e-133transcription factor bHLH139-like isoform X1
SwissprotQ8LEG15e-34BH054_ARATH; Transcription factor bHLH54
TrEMBLA0A2S3IFD11e-132A0A2S3IFD1_9POAL; Uncharacterized protein
STRINGPavir.Hb00249.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.15e-32root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Han Y, et al.
    Altered expression of TaRSL4 gene by genome interplay shapes root hair length in allopolyploid wheat.
    New Phytol., 2016. 209(2): p. 721-32
    [PMID:26334764]
  3. Datta S,Prescott H,Dolan L
    Intensity of a pulse of RSL4 transcription factor synthesis determines Arabidopsis root hair cell size.
    Nat Plants, 2015. 1: p. 15138
    [PMID:27251390]
  4. Song L, et al.
    The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation.
    PLoS Genet., 2016. 12(7): p. e1006194
    [PMID:27427911]
  5. Vijayakumar P,Datta S,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE4 (RSL4) promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth.
    New Phytol., 2016. 212(4): p. 944-953
    [PMID:27452638]
  6. Hwang Y,Choi HS,Cho HM,Cho HT
    Tracheophytes Contain Conserved Orthologs of a Basic Helix-Loop-Helix Transcription Factor That Modulate ROOT HAIR SPECIFIC Genes.
    Plant Cell, 2017. 29(1): p. 39-53
    [PMID:28087829]
  7. Marzol E,Borassi C,Denita Juárez SP,Mangano S,Estevez JM
    RSL4 Takes Control: Multiple Signals, One Transcription Factor.
    Trends Plant Sci., 2017. 22(7): p. 553-555
    [PMID:28487046]
  8. Stanley CE, et al.
    Dual-flow-RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels.
    New Phytol., 2018. 217(3): p. 1357-1369
    [PMID:29125191]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]