PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG337100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 420aa    MW: 47733.7 Da    PI: 8.8866
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG337100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.41.5e-90614183360
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+++++ +a++lL +++++as +gd++qR+a +ft++L+arl++ +s+l + l +++ s    +e l+a++l++ v+ + k
  Pavir.8KG337100.1.p  61 TLLISCAQAVATNNHMRARELLMEIKQHASATGDATQRVALCFTKGLEARLVGAGSQLWQLLMAEHPS---IVEFLKAYRLYYAVCCFKK 147
                          79*********************************************************999999998...9****************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv.pfefn 179
                          ++      +Il+a+ g++++Hi+D+++  G+QW+ Ll+ La R++gpp+++iT++g+++ +   +e++ee+g rL++ A+e+g+ +f+f+
  Pavir.8KG337100.1.p 148 VALSFSTMTILQAMVGKRKLHIVDYGMHFGFQWAGLLRLLAGREGGPPEVKITAIGPAKLKacPAERIEELGCRLSNWANEFGLaSFKFH 237
                          *********************************************************888899********************957**** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          + ++k++ed+++e+L+++++E+++Vn  ++  +l+desv  +   +rd+vL+ +k+++P+v++ +  ++++ ++sF++rf e ++yy+al
  Pavir.8KG337100.1.p 238 T-IMKKWEDVRIEDLNTNTDEVIVVNDLFSFSTLMDESVFFDRqsPRDTVLSNIKKMRPDVFIQSILNCSC-GSSFVARFREVMSYYMAL 325
                          *.7***********************************96554449*************************.679*************** PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                          fd l+a++pres+ r+++E+++lgr + n++aceg +  +r e++++W+ r ++aG++ +pl++++++ +k  ++k++ + + + e+ ++
  Pavir.8KG337100.1.p 326 FDILDATMPRESKSRVVLEQFVLGRPALNIIACEGLDLAQRPEKYRQWQVRNQRAGLRLLPLKSRIVEVVKDAVQKHHHKNFLICEDGHW 415
                          ******************************************************************************999*99999999 PP

                 GRAS 358 lvl 360
                          l++
  Pavir.8KG337100.1.p 416 LLQ 418
                          875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.57733412IPR005202Transcription factor GRAS
PfamPF035145.2E-8861418IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MIKDPEENCA NEMLDEMILH AYDTCIKGMR KLHVSMDTKV DKGNRKKYNK AAKNNMVDIH  60
TLLISCAQAV ATNNHMRARE LLMEIKQHAS ATGDATQRVA LCFTKGLEAR LVGAGSQLWQ  120
LLMAEHPSIV EFLKAYRLYY AVCCFKKVAL SFSTMTILQA MVGKRKLHIV DYGMHFGFQW  180
AGLLRLLAGR EGGPPEVKIT AIGPAKLKAC PAERIEELGC RLSNWANEFG LASFKFHTIM  240
KKWEDVRIED LNTNTDEVIV VNDLFSFSTL MDESVFFDRQ SPRDTVLSNI KKMRPDVFIQ  300
SILNCSCGSS FVARFREVMS YYMALFDILD ATMPRESKSR VVLEQFVLGR PALNIIACEG  360
LDLAQRPEKY RQWQVRNQRA GLRLLPLKSR IVEVVKDAVQ KHHHKNFLIC EDGHWLLQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-34633898330GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677893.10.0PREDICTED: scarecrow-like protein 33 isoform X3
TrEMBLK7TQL60.0K7TQL6_MAIZE; GRAS transcription factor
STRINGGRMZM2G106356_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.13e-94GRAS family protein