PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG164700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 321aa    MW: 34976.4 Da    PI: 7.7318
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG164700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422.1e-13164217558
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          k+ rr++ NRe+ArrsR+R++ ++  Le  v +L++eN +L k++e ++ +++ 
  Pavir.8KG164700.1.p 164 KKMRRMMLNRESARRSRKRRESRLRDLESQVSTLTSENASLLKRMEDMTHKYKD 217
                          899**************************************9988888777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-10156224IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806162214IPR004827Basic-leucine zipper domain
PfamPF001701.4E-11163216IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-10164215No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-11164216No hitNo description
PfamPF124982.4E-5231295IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MLPSRLHSPR LLRLPPVSTL RTYMVGERAG DVVHPRIAGS VNDDVVELLC GGGRGHPGAS  60
TAGLKRKLDL YFAAVAKSME AKSQESSFGY SDSLASGTSQ LTFQASFDVE QSGDGGGASL  120
VTNSNVIHTG HDDYQGKPTN SGTSKQQSDC GVNLDEKSDP AIAKKMRRMM LNRESARRSR  180
KRRESRLRDL ESQVSTLTSE NASLLKRMED MTHKYKDATL DNRNLIIAVE TMRTKMNMAE  240
KAVRTLSETT FLLPSTSELP PSLTLSSFAS DTASPDVANE YSMEHFLQST LHDDQNKPAL  300
SQMQQFPLTS GELGTMLVSL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183RRSRKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG164700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963102.23e-98light-inducible protein CPRF2 isoform X2
TrEMBLA0A2T7EIZ55e-96A0A2T7EIZ5_9POAL; Uncharacterized protein
TrEMBLK3Z7117e-96K3Z711_SETIT; Uncharacterized protein
STRINGPavir.Hb01299.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.15e-13basic leucine zipper 25