PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG157900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 581aa    MW: 60701.9 Da    PI: 7.9745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG157900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65e-06102125123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          +kC+dC++ F r  +L+ H+r+ H
  Pavir.8KG157900.1.p 102 FKCSDCPMKFGREKTLQGHMRSvH 125
                          89*******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.676102130IPR007087Zinc finger, C2H2
SMARTSM003557.2E-4102125IPR015880Zinc finger, C2H2-like
PfamPF139120.051102127IPR007087Zinc finger, C2H2
PROSITE patternPS000280104125IPR007087Zinc finger, C2H2
SMARTSM00355230305327IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-5310329IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MKLRDQEEEA AVGGCKKAAG VRSRGSESPQ PLHQRLPECS RRHEGGAFGS RETELPSGSL  60
ASSAGKGAAT IPQRRSPPPL SREAYGLLRD AASLGVVAAE PFKCSDCPMK FGREKTLQGH  120
MRSVHRQGSP SPSPSSSSEA PTPKKARKKQ KPKQQTVKTE PRHDDSPLPL PMSRGATSRS  180
HQVGHVVGEK PKVTVSQSPA APSNVIVIED HISDDGNDTK NITGSDGDAN PVTAITGFRA  240
VAIASSASDA AAVLPTMARA PAAAIEALWG WGPASGNGPN GPADHSPLGR EAGDRYSSTL  300
DLQRHAGMAC DMVFPTGQAL GWHRKLHYSG LMIGAASNAG SSSARRPAAA AADEQQPLEL  360
SMEAIAMNSN PATVHGSAGT MRRRSFPTSA GSAILALPAL MSPVHDPPQG MAMAGNPVAG  420
LVSAPTAATG SWSLPATTSS VHPAEIAVVP GNRGGRTIRI FGVDNFAAFP SQNQEENLPE  480
EVAMAPGNGE HLFGFNISPP FPSQNPQEET VHVNHGLEEV AVAPGNIERR SICLFGFDDS  540
PAFPSQNQEN PPHEMVPSNR GSRTIRLFGV NMAEGPKEMK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG157900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8I8P01e-118A0A2T8I8P0_9POAL; Uncharacterized protein
STRINGPavir.J13956.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479