PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG089000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 290aa    MW: 30898.2 Da    PI: 7.2843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG089000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000167193123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Pavir.8KG089000.1.p 71 YSCTFCQREFRSAQALGGHMNVH 93
                         99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.11E-66898No hitNo description
Gene3DG3DSA:3.30.160.609.4E-46996IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00537193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1987198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNSTAMDQIG KYWGMWGARR SGGSSSTASP IPAWAEAAAA AAGSEPSWEE QAFARDAAAH  60
LGGCVWPPRS YSCTFCQREF RSAQALGGHM NVHRRDRALL RQGVSSPEDV HAPNDQPQQG  120
SFLYRAASNN PSTMTATTAA GTTAGSAAKF KGDAQDTTTT PTSYLSTIIK ERKNTLLMSM  180
PASIEMRDDR QAIHQCDHGD SDGEESARTT KRRRLNHPSA AALLIFVKPL AAATEVTGGG  240
ESSQALQGLD HYAKVPQTTI ASPNSSSPLV DQHDEVDLEL RLGTTPKVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-136693229superman protein
2l1o_A9e-136693229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.343280.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.8KG089000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387168e-93BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds.
GenBankEU9721098e-93EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828169.11e-156uncharacterized protein LOC112903166
TrEMBLA0A2S3IFW01e-155A0A2S3IFW0_9POAL; Uncharacterized protein
STRINGPavir.Hb00031.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.17e-22C2H2 family protein