PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG390500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 384aa    MW: 41845.5 Da    PI: 7.9395
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG390500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82.1e-40160238178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Pavir.7NG390500.1.p 160 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 238
                          6******************************98725689*************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-33155223IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291158236IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-37159239IPR004333Transcription factor, SBP-box
PfamPF031107.5E-31161235IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MMNRSAAANA CDEFPYVFAS NPAPPSLLPI MDQESSIQRE QLGYNLEANS LALLPPSNAA  60
AAAAGHHHAT IAGHDILQFY PSSHYLAASG NPYSSHFSGS TFQPYYPQAQ AAPEYYFPTL  120
VSSAEENMAS FAATQLGLNL GYRTYFPPRG GFTYGHHPPR CQAEGCKADL SSAKRYHRRH  180
KVCEHHSKAP VVVTAGGLHQ RFCQQCSRFH LLDEFDDAKK SCRKRLADHN RRRRKSKPSD  240
ADAGDKKRAH GNKAAAAKDK AGSSSKNMDI GDGLGTQMLG SALLSKDQDQ AMDLGEVVKE  300
AVDPKGKASM PQHHGMHHQN HHGFPFHSSS AGSCFPQTQA VSGDTTSNIA QVQEPSLAFH  360
HQHHQHSNIL QLGQAMFDLD FEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-271612351184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230247RRRRKSKPSDADAGDKKR
2231236RRRKSK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing leaves. Present at highest levels in very young ligules and auricles. Present pre- and post-ligule and auricle development.
UniprotTISSUE SPECIFICITY: Leaf ligular region, blade and sheath.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7NG390500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A3L6Q0D90.0A0A3L6Q0D9_PANMI; Protein LIGULELESS 1-like
STRINGPavir.Gb00284.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-42squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]