PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG427800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 382aa    MW: 41664.3 Da    PI: 7.7807
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG427800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.82e-40158236178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  Pavir.7KG427800.1.p 158 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 236
                          6******************************98725689*************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.0E-34153221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291156234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.97E-37157237IPR004333Transcription factor, SBP-box
PfamPF031107.4E-31159233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMNLSAAANA TCDEFPYVAS NPAPPSLLPI MEQESSIQRE HQLGYNLEAN SLALLPPSNA  60
AGHHHATIAG HDILQFYPPS HYLAASGNPY GHFSAGSTFQ SYYPQAAQAA PEYYFPTLVS  120
SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ AEGCKADLSS AKRYHRRHKV  180
CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC RKRLADHNRR RRKSKPSDAD  240
AGDKKRAHGN KAAAAKDKAG SSSKNMDIGD GLGTQMLGSA LLSKDQDQAM DLGEVVKEAV  300
DPKGKASMPQ HHGMHQHNHH GFPFHSSSAG SCFPQTQAVS GDTTSNIAQV QEPSLAFHHQ  360
HHQHSNILQL GQAMFDLDFE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-271592331184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228245RRRRKSKPSDADAGDKKR
2229234RRRKSK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing leaves. Present at highest levels in very young ligules and auricles. Present pre- and post-ligule and auricle development.
UniprotTISSUE SPECIFICITY: Leaf ligular region, blade and sheath.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG427800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLA0A3L6Q0D90.0A0A3L6Q0D9_PANMI; Protein LIGULELESS 1-like
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.18e-43squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]