PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG397100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 177aa    MW: 19144 Da    PI: 9.7949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG397100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-05661031254
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          R +++ +++  L++l+ +      +K + a++L +++eYIk L
  Pavir.7KG397100.1.p  66 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKIL 103
                          77788899********998.....8***************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.64254103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-1164120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-564107No hitNo description
Gene3DG3DSA:4.10.280.108.7E-864113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MMDRLLTDGL VSSTGFLLPS PDKFSTSLEG VGESSSIINK KKANGEHAFK KPMLQTPSPL  60
PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHETIEYI KILHDQVGAL SAPYLKNGHQ  120
VHVPQLKSSS PEKSKDSHGE ISLKGRGLCL VPISSTFAVA SEVPVDFWTP FGANFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.114380.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG397100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682565e-99BT068256.1 Zea mays full-length cDNA clone ZM_BFb0111F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822972.12e-97transcription factor bHLH112-like
SwissprotQ94JL35e-49BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A2T7D0H72e-96A0A2T7D0H7_9POAL; Uncharacterized protein
STRINGPavir.J13928.1.p2e-95(Panicum virgatum)
STRINGSi010139m1e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]