PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG331000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LFY
Protein Properties Length: 245aa    MW: 26434.3 Da    PI: 10.4962
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG331000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY2484.2e-7612391282
              FLO_LFY   1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 
                          mdp++ fsa+  f+wd       ppa++++   ++++p     a +  + rele+l+ +yGvr +tva+i+elGft+stL++m+++eldd
  Pavir.7KG331000.1.p   1 MDPNDaFSAAhPFRWDLG-----PPAHAAP---APPPP---PLAPQVGAPRELEDLVAGYGVRPSTVARISELGFTASTLLGMTERELDD 79 
                          676654766548999953.....2322221...11222...2344455679*************************************** PP

              FLO_LFY  89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaee 178
                          +m++l+ +fr+d+l+Ger+G++aa+raer r+++      r      +  ++lda+sqe+ls+e++     aagsgg  + ea+  +++ 
  Pavir.7KG331000.1.p  80 MMAALAGLFRWDVLLGERFGLRAALRAERGRVMSLG---GRF-----HAGSTLDAASQEVLSDERD-----AAGSGGVAEDEAGRRMVTG 156
                          *********************************965...455.....35678***********976.....8899999988888888875 PP

              FLO_LFY 179 kkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqk 268
                          kk+ ++   a ++k k+ ++k                    +  +  +rqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq+
  Pavir.7KG331000.1.p 157 KKQAKK-GAAGTRKGKKARRK--------------------KEPRPLDRQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRVFLLQVQS 225
                          443322.22222222222222....................2234579****************************************** PP

              FLO_LFY 269 iakerGekcPtkvt 282
                          iak  G+k+Ptkv 
  Pavir.7KG331000.1.p 226 IAKLAGHKAPTKVR 239
                          ************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.7E-931239IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDPNDAFSAA HPFRWDLGPP AHAAPAPPPP PLAPQVGAPR ELEDLVAGYG VRPSTVARIS  60
ELGFTASTLL GMTERELDDM MAALAGLFRW DVLLGERFGL RAALRAERGR VMSLGGRFHA  120
GSTLDAASQE VLSDERDAAG SGGVAEDEAG RRMVTGKKQA KKGAAGTRKG KKARRKKEPR  180
PLDRQREHPF VVTEPGEVAR AKKNGLDYLF HLYEQCRVFL LQVQSIAKLA GHKAPTKVRT  240
LQLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A2e-26183238459PROTEIN LEAFY
2vy2_A2e-26183238459PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}.
UniprotTISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG331000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4440500.0GU444050.1 Panicum virgatum floricaula/leafy-like A-type protein (FL) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826267.11e-125probable transcription factor FL
SwissprotQ0JAI11e-113FL_ORYSJ; Probable transcription factor FL
TrEMBLF1AEG31e-128F1AEG3_PANVG; Floricaula/leafy-like A-type protein (Fragment)
STRINGPavir.Ga00621.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.13e-27floral meristem identity control protein LEAFY (LFY)