PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG281600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 301aa    MW: 31222.8 Da    PI: 7.7179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG281600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05526223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         +C+ C+++F ++  L  H+r H
  Pavir.7KG281600.1.p  5 TCKLCSRRFASPRALAGHMRAH 26
                         6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66427IPR007087Zinc finger, C2H2
SMARTSM003550.02426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.14E-7526No hitNo description
PfamPF138941.6E-4526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.14E-7170194No hitNo description
PfamPF139121.2E-10174199IPR007087Zinc finger, C2H2
SMARTSM0035541175195IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-6240254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSIAA AKSQISSASS ASTSLAAAAA GGGLDDDTDA  60
KKPGPIQGQV LREKPKRRAR LAVSDFSDRE SETTDYYSPD AKRSPGGSGD AEPVSSVSDG  120
DTPVEDVALS LMMLSRDSWP APPPPAYYSA YRADSDDARP GPAVAATAAQ KRTRYECPAC  180
KKVFRSYQAL GGHRASNVRG GRGGCCAPPL STPPPPAPLQ PLPECDDGGE EEDPSKATSV  240
FPSGQALGGH KRSHLCPAAA DPSIAMKSLG FIDLNLPAPF DDVENSAVSD PFLSSKPARS  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG281600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825815.11e-141zinc finger protein ZAT1-like
TrEMBLA0A3L6Q7111e-168A0A3L6Q711_PANMI; Zinc finger protein ZAT1-like
STRINGPavir.J38417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.15e-24C2H2-like zinc finger protein