PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG193500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 331aa    MW: 35981.1 Da    PI: 10.4411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG193500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011103120320
                          ETTTTEEESSHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                          C  Cg++F+ ++ L rH 
  Pavir.7KG193500.1.p 103 CRVCGRRFRARDALLRHF 120
                          *****************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094101129IPR007087Zinc finger, C2H2
PROSITE patternPS000280103124IPR007087Zinc finger, C2H2
CDDcd061670.00271199253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFPQLTHLRR RVLAAAPELL APLFFRSLST AATPAARKPT TAVAVLWDLA ASRPPITLPL  60
YDAAVRLHLA ATSFGRLRLS AAFVHPTHRL PPPAVPAATT HLCRVCGRRF RARDALLRHF  120
DAIHAREHAK CLARIDSSRG DRRVRLAAAL SLKLSKYEKA ARELTAGADA AATPADELGR  180
AGIRVALTRT PAASLRERAQ QVLDEGSVGC LMLVSGKDDL ASLLRVARER GVRSVVVGGE  240
SGLARWADVW FRWPDVISGK ARSAAPSVSG KWRDRDVLKG LEWRYEEADD DEAVVFEDSD  300
GDGVEELARR AKGKPWWKLD SDDSDSNVGG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG193500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823075.10.0uncharacterized protein LOC112898963
TrEMBLA0A3L6PUC90.0A0A3L6PUC9_PANMI; Uncharacterized protein
STRINGPavir.J22986.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.13e-32C2H2 family protein