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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG113800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 163aa MW: 16761.3 Da PI: 10.4459 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.2 | 3.8e-10 | 82 | 126 | 41 | 87 |
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +grsW +++ +++++ l++GW++F+ + gL+ gD +v++l + Pavir.7KG113800.1.p 82 WRGRSWGMRF--TGGRQVQRLEAGWRGFALDAGLRLGDACVLELLDA 126 579*******..9999999************************7654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.9E-13 | 43 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-12 | 43 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.405 | 46 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-8 | 48 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MASDAAPKGK SAAASSSAER SAAAAGPDGG DQLQPGILPL LGKPYFACVM CKSHVRPPFQ 60 VVVPRSLAPF LPAATAPATV AWRGRSWGMR FTGGRQVQRL EAGWRGFALD AGLRLGDACV 120 LELLDAGPDR VAFRAQVLRA DIPAAIRGRA GGDTSASPIL ID* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG113800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825273.1 | 6e-88 | B3 domain-containing protein Os04g0386900-like | ||||
Swissprot | Q7XLP4 | 2e-67 | Y4869_ORYSJ; B3 domain-containing protein Os04g0386900 | ||||
TrEMBL | A0A2S3I5Y2 | 2e-87 | A0A2S3I5Y2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01965.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG113800.1.p |
Publications ? help Back to Top | |||
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