PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v5.0

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.7KG113800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 163aa MW: 16761.3 Da PI: 10.4459

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG113800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.2	3.8e-10	82	126	41	87
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +grsW +++ +++++ l++GW++F+ + gL+ gD +v++l + Pavir.7KG113800.1.p 82 WRGRSWGMRF--TGGRQVQRLEAGWRGFALDAGLRLGDACVLELLDA 126 579*****..9999999**********************7654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.9E-13	43	128	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-12	43	136	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.405	46	141	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.3E-8	48	127	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MASDAAPKGK SAAASSSAER SAAAAGPDGG DQLQPGILPL LGKPYFACVM CKSHVRPPFQ 60 VVVPRSLAPF LPAATAPATV AWRGRSWGMR FTGGRQVQRL EAGWRGFALD AGLRLGDACV 120 LELLDAGPDR VAFRAQVLRA DIPAAIRGRA GGDTSASPIL ID*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG113800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825273.1	6e-88	B3 domain-containing protein Os04g0386900-like
Swissprot	Q7XLP4	2e-67	Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBL	A0A2S3I5Y2	2e-87	A0A2S3I5Y2_9POAL; Uncharacterized protein
STRING	Pavir.Ga01965.1.p	1e-108	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8954	35	45

Link Out ? help Back to Top
Phytozome	Pavir.7KG113800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]