PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG363000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 416aa    MW: 44091.4 Da    PI: 8.9511
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG363000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07238260123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk F+r  nL+ H+r H
  Pavir.6NG363000.1.p 238 HYCQVCGKGFKRDANLRMHMRAH 260
                          68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.32E-6236263No hitNo description
PROSITE profilePS5015712.653238265IPR007087Zinc finger, C2H2
SMARTSM003550.0034238260IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-6238264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SMARTSM00355170296329IPR015880Zinc finger, C2H2-like
SMARTSM0035547334360IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MIGGGTNNNP YFLQNHHHQQ QQLFHHALDG MDGGGGGFME PPAASDSADA HCHALLYNLS  60
LLRDKVQQLQ PLVGLAMEHD RPGGTVAAVS SAGAVIQEII TAASSMMYAF QQLCSHGAQS  120
STTANAAPGV VSNIAAAAAV GHARNGGIAD TACGDHQQAA AVMQQQWQHH HHRGGYGYGN  180
RIDTKTSAVV VAAVVPSSSQ SQSQPSTTTA AAMAAEEAAG TSTIIELDAA ELLAKYTHYC  240
QVCGKGFKRD ANLRMHMRAH GDEYKSSAAL ANPAKGKAGG GGDATAAAAR ASRSYYSCPQ  300
EGCRWNRKHA KFLPLKSVIC AKNHYKRSHC PKMYVCNRCN RKHFSVLSDL RTHEKHCGDH  360
RWVCSCGTSF SRKDKLIGHL SLFAGHQAAV PLDRQAANGK RSLLSSSTST THFGT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG363000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632901e-159AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045871e-159AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055441e-159AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149641e-159AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-159CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822509.10.0LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-103STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3L6RHJ30.0A0A3L6RHJ3_PANMI; Uncharacterized protein
STRINGPavir.Fb02219.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.18e-81C2H2 family protein