PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG235900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 302aa    MW: 32352.6 Da    PI: 4.9222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG235900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.1e-152576155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Pavir.6NG235900.1.p 25 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 76
                         89****99**********988422...5**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-102575IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-172585IPR016177DNA-binding domain
CDDcd000183.98E-222585No hitNo description
PROSITE profilePS5103217.7412684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-172684IPR001471AP2/ERF domain
SMARTSM003804.1E-262690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGQPREEYI GALRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ  60
EEAAVAYDIA AIEHRGLNAV TNFDIGHYVS HWQRHRHGHG GGSLGATDAA PVVPFQLPPP  120
DDDSPERPAA AELDETTGAA GFHDGDDHPQ RQTAACPFLG DGAQLVADRA GPPARHAAPT  180
PSALDLLLQW SKFKEMMEQV SAAAMVEAGS NSSSSAAASS ASSSASPQPP LSPQRQPEIR  240
GGTAAPCGFP DDVQTFFDLE NEDAMGFTFA EVDTFLFGDL GEYAAPMFQY RDLDVWSALD  300
G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-144PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3YHX31e-144K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m1e-144(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-35AP2 family protein