PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG141200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 112aa    MW: 11474.1 Da    PI: 8.3685
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG141200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.22.5e-302982357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                         +vrY eC++NhAas+GghavDGC+Ef+++ geegtaaal+CaACgCHR+FHRr v
  Pavir.6NG141200.1.p 29 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTAAALRCAACGCHRSFHRRVV 82
                         68**************************8.999********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576125No hitNo description
PfamPF047701.7E-293081IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-253180IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5753281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-83882IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MMKRMVILRR CHPPPPPAAA LLGGCGGGGV RYGECRRNHA ASMGGHAVDG CREFLAEGEE  60
GTAAALRCAA CGCHRSFHRR VVRRCCCDDD AASAAGAGCS PESSASSTTP R*
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG141200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656184e-86BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds.
GenBankEU9719694e-86EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151712.26e-50mini zinc finger 3
SwissprotQ0J5F85e-35MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBLA0A3L6RK522e-52A0A3L6RK52_PANMI; Mini zinc finger 3
STRINGPavir.Fb01647.1.p3e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143134120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74660.14e-12mini zinc finger 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]