PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG413400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 406aa    MW: 43024.3 Da    PI: 8.7414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG413400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07230252123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cgk F+r  nL+ H+r H
  Pavir.6KG413400.1.p 230 HYCQVCGKGFKRDANLRMHMRAH 252
                          68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-6228255No hitNo description
PROSITE profilePS5015712.653230257IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-6230256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034230252IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
SMARTSM00355140284317IPR015880Zinc finger, C2H2-like
SMARTSM0035547322348IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MIGGGANNNP YSFLQNHHHH QQQQLFHHAL DGMGGGGGGF MEPPASDSAD AHCHALLYNL  60
SLLRDKVQQL QPLVGLEMEH DGPGGPVAAV SSAGTVIQEI ITAASSMMYA FQQLCSHGGG  120
AQSSTTANAA PGVMMSNNIA AAVGHAKNGG IADSTACGDH QQAAAVMQQQ WQQHRGGYGY  180
VDNRIDTKTS AAVVVAAAVP SSSQTAAVMA AGTSTIIELD AAELLAKYTH YCQVCGKGFK  240
RDANLRMHMR AHGDEYKSSA ALANPAKAAG DATAASSSSS RSYYSCPQEG CRWNRKHAKF  300
QPLKSVICAK NHYKRSHCPK MYVCNRCNRK HFSVLSDLRT HEKHCGDHRW VCSCGTSFSR  360
KDKLIGHLSL FVGHQAAVPL DRQAANGGKR SSLLSSSTST THLGT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG413400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632901e-163AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045871e-163AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055441e-163AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149641e-163AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-163CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822509.10.0LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-103STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3L6RHJ30.0A0A3L6RHJ3_PANMI; Uncharacterized protein
STRINGPavir.Fa00049.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-94C2H2 family protein