PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG395100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 355aa    MW: 36500.8 Da    PI: 5.5906
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG395100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.73.6e-37611686100
                  TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 
                           r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++        + +ssss+s ss +
  Pavir.6KG395100.1.p  61 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIATtvdgvirIPTQSSSSSSPSSLA 150
                          6999********************************************************777774433333333222222222212222 PP

                  TCP  89 ......kaaksaakskks 100
                                ++++++  +k +
  Pavir.6KG395100.1.p 151 mvmvdgEESSAKRRRKLQ 168
                          455544222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.38163117IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-3063157IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEAQAQDRAE EGEAAARQHV VGAGAAGVAM GAIPMHGFMV PKPEPVEYFG GMAVVRSKPP  60
PRNRDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQQS EPAIIAATGT  120
GTVPAIATTV DGVIRIPTQS SSSSSPSSLA MVMVDGEESS AKRRRKLQPT RAAAGASPLA  180
TAAPAAYYPV IADPLLQGTG GAAISVPSGL APITAAPGAP QGLVPVFAVP AAGSPGGGAN  240
RMIPQATAVW MVPQPGAAAG GAAAQPAQFW AIQSAPQLIN LGGGQTAVFP TAVNVADFQQ  300
QQHASTMSHN SNSEQHPGSG PHEQQRGGRS DVDHPEEEED DDEEEPVSDS SPEE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG395100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458660.0EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819925.10.0transcription factor PCF2-like
SwissprotA2YXQ11e-153PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-153PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A2S3I4I00.0A0A2S3I4I0_9POAL; Uncharacterized protein
STRINGPavir.Fa00111.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-42TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]