PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG291700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 232aa    MW: 24506.1 Da    PI: 5.2955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG291700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-172372255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykGVr +k +grWv+eIr p++   r r++lg++ +ae+Aa+a +aa+ +l+g
  Pavir.6KG291700.1.p 23 RYKGVRLRK-WGRWVSEIRMPNS---RERIWLGSYESAEKAARAFDAAAVCLRG 72
                         7******99.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.8652381IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-272383IPR001471AP2/ERF domain
PfamPF008472.8E-102372IPR001471AP2/ERF domain
SMARTSM003802.2E-322387IPR001471AP2/ERF domain
CDDcd000186.45E-182383No hitNo description
SuperFamilySSF541711.7E-182382IPR016177DNA-binding domain
PRINTSPR003671.5E-82435IPR001471AP2/ERF domain
PRINTSPR003671.5E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDDGAGASRS DGEGSPRPPA ERRYKGVRLR KWGRWVSEIR MPNSRERIWL GSYESAEKAA  60
RAFDAAAVCL RGSRAGSLNF PESPPNVRHI PGALLTPEKI QAEAVRHANQ PARSSVASSA  120
STAVSPSQQA APAGGASIDR TALSLPSTTY GSGTALAGSD DDLDWSFMDT LPSMPVSSAA  180
GTAAAHHIVP ALDDFMYGSP HPVMPLSGEA SQDMIDGDDD HTFISDDLWR F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG291700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283821e-109KJ728382.1 Zea mays clone pUT6665 AP2-EREBP transcription factor (EREB199) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822439.11e-130ethylene-responsive transcription factor ERF017-like
TrEMBLA0A3L6PN731e-132A0A3L6PN73_PANMI; Uncharacterized protein
STRINGPavir.Fa00741.1.p1e-166(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.15e-24ERF family protein