PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG281800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 216aa    MW: 24129.1 Da    PI: 10.7622
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG281800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.6e-1545103255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GV++++++gr++A+++d  + +g    k+ k+++lg ++ ++ Aa+a++ a++k++g
  Pavir.6KG281800.1.p  45 AYRGVTRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 103
                          69******************4.55555887557**********99*************98 PP

2AP230.68.4e-10146180138
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                          s+y+GV +++ +grW+A+I  +     +k+ +lg++g 
  Pavir.6KG281800.1.p 146 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYGE 180
                          89****99**********988422...5*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-1644112IPR016177DNA-binding domain
PfamPF008476.8E-1245103IPR001471AP2/ERF domain
PROSITE profilePS5103219.50645111IPR001471AP2/ERF domain
SMARTSM003804.5E-2345117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-1545111IPR001471AP2/ERF domain
PRINTSPR003673.4E-54657IPR001471AP2/ERF domain
PRINTSPR003673.4E-593113IPR001471AP2/ERF domain
PfamPF008471.1E-5146180IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-5146180IPR016177DNA-binding domain
PROSITE profilePS510328.715147178IPR001471AP2/ERF domain
SMARTSM003800.0049147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-5147179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAKPRRSAAT DGDSSAAVGV RGEPAAKRAR RKSGPRESPS RRSSAYRGVT RHRWTGRFEA  60
HLWDKDARGG SRGKKGKQVY LGAYDDEDAA ARAHDLAALK YWGPGTVLNF PLTGYDEELR  120
EMEGQPREEY IGALRRRSSG FSRGVSKYRG VARHHHNGRW EARIGRVLGN KYLYLGTYGE  180
HAFLPDENLF PSRESAWVIR KAAGWLVSLL DRCLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698471e-145BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
GenBankKJ7282111e-145KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.17e-98PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ6X5Y63e-74WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK3YHX32e-93K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m6e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-55AP2 family protein