PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG168300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Nin-like
Protein Properties Length: 121aa    MW: 13361.3 Da    PI: 10.1048
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG168300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK25.13.4e-081760850
               RWP-RK  8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkR.WPhRkik 50
                         +d++   +l +kdAA  L+ ++ +L   C q+G +R WP  ki+
  Pavir.6KG168300.1.p 17 SDVRDVLHLRLKDAAAALNASTIYLRYLCHQNGFPRgWPGKKIR 60
                         7899999***********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS515199.523184IPR003035RWP-RK domain
PfamPF020429.7E-81660IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAGRRTGRPP ASRPEWSDVR DVLHLRLKDA AAALNASTIY LRYLCHQNGF PRGWPGKKIR  60
YLKAAGKTFT LADIVETKKM TDKDMISIHE PVVNNNPHPP GEELATLNLI DKVGLQSSSE  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG168300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662757.13e-21protein RKD4
TrEMBLA0A3L6PM427e-66A0A3L6PM42_PANMI; Protein RKD4-like
STRINGPavir.Fa01691.1.p2e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1844359