PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG139800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 237aa    MW: 25744.1 Da    PI: 5.6977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG139800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027205227123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C++C+  Fs+   L  H++ H
  Pavir.6KG139800.1.p 205 YECKICPAKFSSAQALGGHMSYH 227
                          99******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-5202231No hitNo description
PfamPF139121.8E-7205229IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325205232IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNPPPDINST NNEPIVSPLH EALVGTIAMP IVDTSSQSQP IFQAPQEPSK MPMNHNSTLP  60
NFTEERLPLS SLFPHTVPTT VTPVGSIPFQ ERFTANSINQ QQSFSSEHDF LTRPVSDYLN  120
FSDHMAIMSM EAPPITSLLQ GDHVAVLHAH LNTIEGLDLG PIFENPTEVP KEQQVPVMET  180
VGASDNIAQS MSGSMMKNER GGHIYECKIC PAKFSSAQAL GGHMSYHSKA KKKGTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG139800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T7DM011e-149A0A2T7DM01_9POAL; Uncharacterized protein
STRINGPavir.Fa01552.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612