PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG619300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 524aa    MW: 55228.3 Da    PI: 8.2706
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG619300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05103125123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Pavir.5NG619300.1.p 103 FVCEICHKGFQRDQNLQLHRRGH 125
                          89*******************88 PP

2zf-C2H212.30.00051215233523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr++++++H   +
  Pavir.5NG619300.1.p 215 DCGTVFSRRDSFVTHRAFC 233
                          9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-5102125No hitNo description
Gene3DG3DSA:3.30.160.607.9E-5102125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.637103125IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.0E-4173205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-5180205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSGAAARECA GSFSSVSSNN TASREVEEEF LHHQQRQFHI KPLLGSPPEM GTDDGDLQRV  60
TGPSEPPPAL PTVKKKRSLP GTPDPSAEVI ALSPRTLMAT NRFVCEICHK GFQRDQNLQL  120
HRRGHNLPWK LRQRGGGADA AGGPPRKRVY VCPKASCVHH NPARALGDLT GIKKHYCRKH  180
GEKKWKCERC AKRYAVHSDW KAHAKVCGTR EYKCDCGTVF SRRDSFVTHR AFCDALAEEN  240
NKLAQPMNMA TVASALQGQA AHHLAFPPSH SHLQEADAAE DDAADDFALD TKSPQLRMLP  300
PAMSDDAAAP LLPPLSMAGC MLSSLAAARP APSPSAAFFT GARIGLDGPS DPSRSMGGGF  360
SATASMSATA LLQKAAEMGA TTGGGGYGYG AGFATVGFGP MLGGPDRLPA MSPFGPLKAD  420
PPPYDGLPLG HAQLVGLDAG RLLPGQLYYG GSNGGAVGSM MHGAYGSSAA DDGSLMHGGQ  480
QQQTTEHRRP DGLRVVDYLG VDDQRTFSGS GVSPFGPHLG PWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33181248370Zinc finger protein JACKDAW
5b3h_F1e-33181248370Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5NG619300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2T7DBX20.0A0A2T7DBX2_9POAL; Uncharacterized protein
STRINGSi001316m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]