PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG682400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 465aa    MW: 47934.6 Da    PI: 9.5583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG682400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-05117139123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cg++F ++     H+r+H
  Pavir.5KG682400.1.p 117 FACHVCGRRFHSPKAVDGHMRVH 139
                          78*******************99 PP

2zf-C2H211.50.00091299317119
                          EEETTTTEEESSHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                          y+C+ Cgks+s++  L  H
  Pavir.5KG682400.1.p 299 YSCKLCGKSYSSHQGLGGH 317
                          99*********99888666 PP

3zf-C2H214.40.00011360382123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F++   L  H+r+H
  Pavir.5KG682400.1.p 360 HECRKCHKVFPTGVALGGHMRMH 382
                          78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.24117144IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-7117139No hitNo description
PfamPF138940.0013117139No hitNo description
SMARTSM003550.0023117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-7294321No hitNo description
PROSITE profilePS5015710.221299326IPR007087Zinc finger, C2H2
PfamPF139129.8E-4299321IPR007087Zinc finger, C2H2
SMARTSM003550.95299321IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280301321IPR007087Zinc finger, C2H2
SuperFamilySSF576677.34E-6357388No hitNo description
PfamPF139122.7E-9360383IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471360387IPR007087Zinc finger, C2H2
SMARTSM003550.018360382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280362382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MGSDSSSRRR RPLRDLDGGG GGDIEEGEYV PEAPESDDSG AGGDEELCRL QRRLEGELGR  60
RVSWLEVVMA SGRVAVPPRL APPSSESDGT ISDGGRSPSA VSSCVMISAT GASAPRFACH  120
VCGRRFHSPK AVDGHMRVHG NGRQQVPLAV SGGWAATGRR GWTGGGKPSV SASLNSESTD  180
NHSTATVAEP IPMAIAMPAT PVVSTGTNLS GEESSSASAQ PMHYELHVAT VVTVANPSST  240
GVVIHQHAAP PPSAAAGQAR PVHQVAAPRP AARQAQLVRR GPLAPPRAAR PAPQPAREYS  300
CKLCGKSYSS HQGLGGHAAG HKNRQKEAAA AAAAAMMGQE DGGAFLAAFR RGRRAAQPPH  360
ECRKCHKVFP TGVALGGHMR MHYTGPPIVH RKNKKQRGLV SEADLRLALS TATEAPPQPA  420
AAVAGRVRLF GIDIGSQVQA PPPPPPEDQG SGTAEGSSSA GEQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG682400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682476.11e-141replication initiator 1-like
TrEMBLA0A3L6SPK21e-171A0A3L6SPK2_PANMI; Uncharacterized protein
STRINGPavir.Ea03590.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-11zinc-finger protein 2