PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG217700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 615aa    MW: 65966.6 Da    PI: 6.331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG217700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.7e-16368414455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Pavir.5KG217700.1.p 368 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 414
                          5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.63E-17361418No hitNo description
SuperFamilySSF474591.83E-20362423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981364413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20368422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-13368414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17370419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MSDGNDFAEL LWENGQAVVH GRRKQPPQTS FPPFTCGAAS SSRAQEKQPG GDPVALLKTG  60
GVFGAGGLAP SLHDFSSGLD ATRDNGDLDD TVPWIHYPII EEDAAEPALA DSYSPDFFSE  120
LYAAAAAATN LGSLPPPVQH TTNNRSNPVT TTGSEPEPSK ESHRFQIPGP STRPEPQAEF  180
AATKQPRLGG GGEGLMNFSL FSRPAAMARA SLQNAQRPPQ TGTDKASNVT TSTRVESTVL  240
QSASGPRTAP VFTEQRTAWS QQPKEVRFSC TAAPTAGNLQ QEMPRDRLGS ITLQKKVETR  300
KAPEAAVATS SVCSGNGAGT GNDESWRQHK RKSQAECSAS QDDDLEDESG GMRRSGSRGT  360
KRSRTAEVHN LSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM  420
SMGSGLCIPP MLLPPTMQHL QIPPIAHFPH LGMGLGYGMG VFDMNSTPGV PFPSMPGAHF  480
PCPMIPGTPP QGLGMPGRNT VPMFGLPGQG IHPSASSVQP FQYLAGIPVR PNLPPQFSAA  540
MANMVQQQDV ATQQQQNMNN EARRGTNTGD PELQTILQVE NQHFSVPSVQ TESGQFLDSG  600
SNRTDTAERN GPET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.47321e-44callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG217700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817917.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
SwissprotQ0JNI90.0PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A3L6R2670.0A0A3L6R267_PANMI; Transcription factor APG-like isoform X1
STRINGPavir.Ea01048.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-43phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]