PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG049600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 462aa    MW: 49200 Da    PI: 6.7894
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG049600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64.1e-12266308855
                          HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er+RR+++N++f+ L+ +lP+ a      K +K +iL +A eY++sL+
  Pavir.5KG049600.1.p 266 SERKRREKLNDSFQALKAVLPPgA------KKDKTSILIRAREYVRSLE 308
                          6********************966......99999***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.853258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-12260312No hitNo description
SuperFamilySSF474597.98E-15260324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12262306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-11264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9266308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00129299327No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-4307325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MDSSCSSWLH GYINNAGNNG FMCGYAAGSC APSAGLQYRE EEEEEQQEQF LINSSHQIQH  60
HLNQINMRMN MDDDEASVYD VPASSDGGGV SPPIGVHNHP IGVDGGHGLL IAGSFPSSSA  120
SSSLSLPSAS ISCSPESSAH VLATPGSSQY LEVSSQVPLP PAVPYDHHGQ YANLHVPAAA  180
AAMAPATKTN TGAFKRYARH LGPKRPPKPG ACGQRMFKTA MSVLSKMHAA ARYSSQQQQQ  240
YYYQQAAAAE AAAPALSVNQ LQHMFSERKR REKLNDSFQA LKAVLPPGAK KDKTSILIRA  300
REYVRSLESK VAELEEKNRL LESRLVRGDD SSDDGSGKDA AAEDSGKNKV HVEITRAAKE  360
VRATAAEPPR ELCTLKIAVS SPCNMTDVAV RTLQCLKEQI GDGVTLVAMS TSGSAAEASE  420
ANTNNSPRAD LTLRIKSPPG WEEQPVRDAV AKVVADALTP P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266271ERKRRE
2267272RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.5KG049600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817328.10.0putative transcription factor bHLH041
TrEMBLA0A2T7DSE30.0A0A2T7DSE3_9POAL; Uncharacterized protein
STRINGPavir.Ea00369.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-21bHLH family protein