PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG006100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 647aa    MW: 70343.9 Da    PI: 7.2711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12491537455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Pavir.5KG006100.1.p 491 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 537
                          799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.1E-5185270IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-15490541No hitNo description
SuperFamilySSF474599.29E-19490554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18491550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10491537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MEGIVVITSY YSIDLKAMKV ICTVIMVMKM EMEDDGAVGG TGGTWTEEDR ALGAAVLGTD  60
AFAYLTKGGG AISEGLVAAS LPDDLQNKLQ ELVESEGPGT GWNYAIFWQL SRTKSGDLVL  120
GWGDGSCREP RDGEVGAAAS AGSDDTKQRM RKRVLQRLHI AFGVADEEDY APGIDQVTDT  180
EMFFLASMYF AFPRRAGGPG QVFAAGIPLW IPNNERKVFP ANYCYRGFLA NMAGFRTIVL  240
VPFESGVLEL GSMQHIAESS DTIQTIRSVF TGAGGNKAAV QRHEGNGPTP PERSPGLAKI  300
FGKDLNLGRP SAVPAVGVSK VDERSWEQRA AAAGGTSLLP NVQKGLQNFT WSQARGLNSH  360
QQKFGNGVLI VSNEAAHRSN GAADSPSATQ FQLQKVPQLP KLQLQKLPHI QKTPQLVNQQ  420
PLQPQVPRQI DFSAGSSSKS GVLVTRAAVL DGESAEVDGL CKEEGPPPVI EDRRPRKRGR  480
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQKKL  540
KDMETERERL LESGMVDPRE RGAPRPEVDI QVVQDEVLVR VMSPMESHPV KKVFQAFEEA  600
EVRVGESKVT GNNNGTVVHS FIIKCPGTEQ QTREKVIAAM SRVMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-24832707192Transcription factor MYC3
4rqw_B2e-24832707192Transcription factor MYC3
4rs9_A2e-24832707192Transcription factor MYC3
4yz6_A2e-24832707192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1472480RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.207500.0callus| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967368.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_004967369.10.0PREDICTED: transcription factor bHLH13-like
TrEMBLK3XPY30.0K3XPY3_SETIT; Uncharacterized protein
STRINGSi003963m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.37e-71bHLH family protein