PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG231900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 326aa    MW: 34150.6 Da    PI: 6.8019
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG231900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.31.3e-3887166283
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 
                          a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t++WLlqqa+pai ++tgt++++as+  +++   s  
  Pavir.4NG231900.1.p  87 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAP--SLP 166
                          789******************************************************************77732222..222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3192271IPR005333Transcription factor, TCP
PROSITE profilePS5136928.03993147IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDPKFPTPPP LNKAEPTTAT TTTTTSTAQQ LDPKDYQHQQ PAQHQEQHHH HLQIQIHQPP  60
QQDGGGGGKE QQLQVAAPAG ERRVALAPKR SSNKDRHTKV DGRGRRIRMP ALCAARIFQL  120
TRELGHKSDG ETVQWLLQQA EPAIVAATGT GTIPASALAS VAPSLPSPNS GFARPHHHHP  180
HHMWAPPTAS AGFSSPAFLN SAGAGAGDAA GIGGLMQRMG LPAGLEMSAG GAAGGTLGAG  240
GHIGFAPMFS GHAMPGLELG LSQDGHIGVL AAHAQSISQF YHQVGAAGAS GQLQHQHEHQ  300
HHHHQQQEDG EDDREDGESD EESGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.9910.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4NG231900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386720.0BT038672.1 Zea mays full-length cDNA clone ZM_BFb0307K22 mRNA, complete cds.
GenBankBT0683480.0BT068348.1 Zea mays full-length cDNA clone ZM_BFb0130H19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816563.11e-150transcription factor TCP20-like
SwissprotQ9LSD58e-48TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A2S3HNJ11e-148A0A2S3HNJ1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DC901e-148A0A2T7DC90_9POAL; Uncharacterized protein
STRINGPavir.J03131.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28643269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.14e-39TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]