PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG175700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 386aa    MW: 43127.2 Da    PI: 5.0396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG175700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.96.3e-30271651128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                          lp+G++F+P+ +el+++ L+k+ ++       ++++   ++ev +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++    
  Pavir.4NG175700.1.p  27 LPKGVKFNPS-KELLWHLLAKHGKSGIkphpfIDEFIPtVEEVdGICYTHPQKLP-GVKKNGSVSHFFHRTFKAYNTGNRKRRKINtddl 114
                          799******8.5788788877655443556554444444888866**********.667778899******************7444466 PP

                  NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+k+vl+  g++ g+kk++v+y  +++  k+ekt+Wvmh+y+l
  Pavir.4NG175700.1.p 115 aDVRWHKTGKTKPVLV-VGKHLGCKKIMVLYmsTEKGGKAEKTNWVMHQYHL 165
                          6899************.8899**********5444666778*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3411184IPR003441NAC domain
PROSITE profilePS5100528.09527184IPR003441NAC domain
PfamPF023651.3E-1128165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSNPSKECPK CSHVIDNSDV VHQWPGLPKG VKFNPSKELL WHLLAKHGKS GIKPHPFIDE  60
FIPTVEEVDG ICYTHPQKLP GVKKNGSVSH FFHRTFKAYN TGNRKRRKIN TDDLADVRWH  120
KTGKTKPVLV VGKHLGCKKI MVLYMSTEKG GKAEKTNWVM HQYHLGTGED EKEGEYVVSK  180
LFFQQQFKPG EKNAQELTTG DAVESMAAEA DASDFTTLPF EEHVSTIEEV AHNPEHNPYQ  240
GNENCEINIE ENAAEGTVVH PSSEKPEGGD NPQSQDPKLW EGDSQFELLD SQQLAGLAIC  300
DEFLLSQSQT SCGGGDEPRA IKPRLAVYAQ LPTEDFKKDL EECQQLEPPD AVNLEFDSTA  360
EFRLSQIDFS QDSFMTWAGS KMIDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965197.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-123NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK3XXI10.0K3XXI1_SETIT; Uncharacterized protein
STRINGSi006639m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-122NAC family protein