PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4NG000100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 205aa    MW: 21873.5 Da    PI: 5.694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4NG000100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS161.47.8e-501182193374
                 GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281
                          +L+vk+gE++aVn+vl+ hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++ +rf++al+yy+a fd++ +a+l+ +s +
  Pavir.4NG000100.1.p   1 MLHVKRGECVAVNCVLAAHRLLRDDTGAAL--ADFLGLARSTGAAILLLGEHEDALNSGRWEARFARALRYYAAAFDAVgAAGLSDASPA 88 
                          79********************87777666..89*********************************************99********* PP

                 GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvs 369
                          r+k E++ ++rei+n+va e a+r+erhe+++ Wr+r+ee GF+++ l++++a+qa+++ r+++   y+v+ +   + l+l W d+p+++
  Pavir.4NG000100.1.p  89 RVKAEEM-FAREIRNAVAFEDADRFERHESFAGWRRRMEEGGFQNAGLGDREAMQARMIARMFAPGNYSVQAQgdGEGLTLRWLDQPMYT 177
                          *******.********************************************************555*999554367788********** PP

                 GRAS 370 vSaWr 374
                          vSaW+
  Pavir.4NG000100.1.p 178 VSAWT 182
                          ****6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.6E-471182IPR005202Transcription factor GRAS
PROSITE profilePS5098521.5691160IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MLHVKRGECV AVNCVLAAHR LLRDDTGAAL ADFLGLARST GAAILLLGEH EDALNSGRWE  60
ARFARALRYY AAAFDAVGAA GLSDASPARV KAEEMFAREI RNAVAFEDAD RFERHESFAG  120
WRRRMEEGGF QNAGLGDREA MQARMIARMF APGNYSVQAQ GDGEGLTLRW LDQPMYTVSA  180
WTPVGDGGGG GSTVSASVST TGQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-194181197374GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.180180.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698760.0BT069876.2 Zea mays full-length cDNA clone ZM_BFb0307D24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436390.11e-115hypothetical protein SORBIDRAFT_10g001690
SwissprotQ9CAN36e-51SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0A9GGP81e-128A0A0A9GGP8_ARUDO; Uncharacterized protein
STRINGSb10g001690.11e-114(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.12e-41GRAS family protein