PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG313300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 98aa    MW: 10581.2 Da    PI: 9.3095
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG313300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134163123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C+k+F+++     H++ H
  Pavir.4KG313300.1.p 41 YKCSFCSKTFKSPQARGGHQNAH 63
                         9***********98776666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-43866IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.02E-63979No hitNo description
PROSITE profilePS501579.934168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MAGKASSNPK ECYPYALASL GSVVWPSIVP PMQPQNLETL YKCSFCSKTF KSPQARGGHQ  60
NAHKKEVAEL RRTLGEEMAI KRAKRDCGVG ASLDVDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG313300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0VTX21e-29A0A1W0VTX2_SORBI; Uncharacterized protein
STRINGPavir.Da00436.1.p2e-67(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2103446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-09C2H2 family protein