PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG309000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 416aa    MW: 44340 Da    PI: 7.6851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG309000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05192211120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Pavir.4KG309000.1.p 192 FSCPVCYKTFNRYNNMQMHM 211
                          89*****************9 PP

2zf-C2H211.70.00077276298123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+k F  + + ++H +++
  Pavir.4KG309000.1.p 276 FMCRKCSKAFAVRGDWRTHEKNC 298
                          89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.36E-5188214No hitNo description
PROSITE profilePS501579.743192219IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-6192211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576673.59E-6260296No hitNo description
Gene3DG3DSA:3.30.160.609.7E-6262296IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573276296IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGDPYTNFLR GYYSSHFPPS NPPSFPTSGS YASSYLHPPP PSPPIREALP LLSTLTPSSS  60
SAATNHQQHH DDVAARDHKA ACRRAASCSG QDDTADQASG EVTVALHIGL PSPGPSESAA  120
GGSESREPAA EGSSSLQQPG DGHEGGGDEE DGDDAEDAAM AVGCASIGIG RLTKGQYWIP  180
TPSQILIGPT QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TAMLRLPCYC  240
CAAGCRNHID HPRARPLKDF RTLQTHYRRK HGIKPFMCRK CSKAFAVRGD WRTHEKNCGK  300
FWYCACGSDF KHKRSLKDHI RAFGRGHAAC GIDCFDDGLD DDDGDGRDDR DPSISSEVID  360
HAAGGGGTAA AANRSNTAAS AAATATGAAS SSYRHRHWKP PPPPPPPSRG SGGLL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG309000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389150.0BT038915.1 Zea mays full-length cDNA clone ZM_BFb0339K06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965894.11e-180zinc finger protein WIP2
SwissprotQ9SVY11e-123ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLK3XXF81e-179K3XXF8_SETIT; Uncharacterized protein
STRINGPavir.J12268.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]