PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG288700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 368aa    MW: 38758 Da    PI: 9.2796
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG288700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17184217134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Pavir.4KG288700.1.p 184 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 217
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.24E-12176218No hitNo description
SMARTSM004014.3E-16178230IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268182214IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-14182217IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-14183215No hitNo description
PROSITE patternPS003440184209IPR000679Zinc finger, GATA-type
PfamPF003202.8E-15184217IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGAD HHQDHHHHHQ GHFQAFTLPK DPPILFPFVI SSSSSANESS  60
LSYGSPEGHH HLFRQQHQAM LEPQHMIGGS SSASVFATPF PTVESIRDDM IEPSSYDPYD  120
MGRLQVVGSL ETAGSWTPPA KMRITRKATA DPGAAAKKPR RKAQGYEDMM SMGGQPNLGV  180
IRVCSDCNTT KTPLWRSGPC GPKSLCNACG IRQRKARRAM MASGGGGSGP VPADGAKAAT  240
ATPRGAMAAP AHPKVKKEKR GDLDRSLPFK KRGKVVQDHA GAAAPPAAAH KAVVQPAAEV  300
ADDAGPSSRD LVDNIGLLSW SRSPPAPPSA AAASCSFRAS PGLPVQQDEI TDAAMLLMTL  360
SCGLVRS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG288700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812836.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-69CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2S3HIY40.0A0A2S3HIY4_9POAL; Uncharacterized protein
STRINGPavir.Da00760.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.11e-20GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]