PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG282300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 414aa    MW: 44249 Da    PI: 7.4731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG282300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05247266120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Pavir.4KG282300.1.p 247 FSCPVCFKTFNRYNNMQMHM 266
                          89*****************9 PP

2zf-C2H2110.0013333353323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  Cgk F  k + ++H +++
  Pavir.4KG282300.1.p 333 CRRCGKAFAVKGDWRTHEKNC 353
                          *****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38247269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64247274IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-6247266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
SMARTSM00355180294326IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.13E-6313351No hitNo description
Gene3DG3DSA:3.30.160.603.9E-5318351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.538331351IPR007087Zinc finger, C2H2
SMARTSM00355140331351IPR015880Zinc finger, C2H2-like
SMARTSM00355220357380IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MENPYTSFFK SHPHHHRHYY HPAAPPPAPA ATPAAYSSSL PFFAAHLHQP PTHTPPAPPS  60
PPLREALPLL SLAPAAASSR GITREQQGQR GRAAADSDED GDEEEEEEEG GGPAASSNVR  120
HGQQRVGGGG LFADLNAKAA GDRMGVESGA GSGSAAGDVT VALRIGLPTT SAGSADLIGA  180
RRRHQDGGAE EEDDDEGRND RENGGGEEEG EAVAAPLGFT STPIGRLNKG QYWIPTPSQI  240
LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGIQPTAMLR LPCYCCAVGC  300
RNNIDHPRAK PLKDFRTLQT HYKRKHGLKP FLCRRCGKAF AVKGDWRTHE KNCGRLWYCL  360
CGSEFKHKRS LKDHARAFGH GHGFVAGAGC GGGDDDDGAI SDVDHDGAAA ASR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG282300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696610.0EU969661.1 Zea mays clone 333696 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799833.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-118ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A3L6QMZ70.0A0A3L6QMZ7_PANMI; Zinc finger protein WIP2-like
STRINGPavir.J16431.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-105C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]