PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG266200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 158aa    MW: 16972.1 Da    PI: 11.216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG266200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-0596118123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ Cg sF +   L  H+r+H
  Pavir.4KG266200.1.p  96 HACGTCGLSFATGQALGGHMRRH 118
                          67********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.9E-46984IPR007087Zinc finger, C2H2
PfamPF139123.1E-995119IPR007087Zinc finger, C2H2
PROSITE profilePS501579.1296118IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MERRRDDLRF IEEDNDGHRA AAASFHHDVF LSLSCGSSSS FLRGSSRQHA TTNTPSLAAA  60
RAGVRLHDFA TFQALGGHRT SHLRRPTAKP KRVVAHACGT CGLSFATGQA LGGHMRRHRW  120
AAGPAMGPGD LDLTQAIVLK ERLSSTSSSL QLLDLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG266200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317868.11e-30zinc finger protein ZAT5-like
TrEMBLA0A3L6Q4K85e-30A0A3L6Q4K8_PANMI; Zinc finger protein ZAT11-like
STRINGPavir.Da01711.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-14C2H2 family protein