PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG138900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 429aa    MW: 47755.1 Da    PI: 4.8297
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG138900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.51.6e-33581971128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                          lp+G++F+P+d+el+++ L+k+ ++       ++++   ++ev +i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++    
  Pavir.4KG138900.1.p  58 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfIDEFIPtVEEVdGICYTHPQKLP-GVKKNGSVSHFFHRTFKAYNTGNRKRRKINtddl 146
                          799************998888755544556554444444888866**********.667778899******************7444466 PP

                  NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+k+vl+ +g++ g+kk++v+y  +++  k+ekt+Wvmh+y+l
  Pavir.4KG138900.1.p 147 aDVRWHKTGKTKPVLV-DGKHLGCKKIMVLYmsTEKGGKPEKTNWVMHQYHL 197
                          6899************.999***********5534556667*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3942216IPR003441NAC domain
PROSITE profilePS5100531.47958216IPR003441NAC domain
PfamPF023651.3E-1459197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MTGTTWIIDS QRFATKIKNA SGSSDPSKQK WMSNPSKECP KCSHVIDNSD VVHQWPGLPK  60
GVKFDPSDQE LLWHLLAKHG KSGIKPHPFI DEFIPTVEEV DGICYTHPQK LPGVKKNGSV  120
SHFFHRTFKA YNTGNRKRRK INTDDLADVR WHKTGKTKPV LVDGKHLGCK KIMVLYMSTE  180
KGGKPEKTNW VMHQYHLGTG EDEKEGEYVV SKLFFQQQFK PGEKNAQELT TGDAVESMAA  240
EADAVESMAA EADASDFTTL PFEEHVSTIQ EVVHNLEHNP YQGNENCEIN IEENAAEGTA  300
VHPSSEKPES GDNPQSQDPK LWDGDSQFEL LDSQQLAEGL AICDEFLLSQ SQTSCGGGDE  360
PRAIKPRLAV YAQLPTEDFK KDLEECQQLE PSDAVNLDLD STAEFRLSQI DFSQDSFTTW  420
AGGKMIDD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965197.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-147NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK3XXI10.0K3XXI1_SETIT; Uncharacterized protein
STRINGSi006639m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-115NAC family protein