PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG058800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Nin-like
Protein Properties Length: 387aa    MW: 41571 Da    PI: 5.2361
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG058800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.23.3e-23298347352
               RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ++++l+dl++yF+lp+++AA++Lgvc+TvLK + R++ ++RWPhRkiks+
  Pavir.3NG058800.1.p 298 SNLQLSDLARYFHLPMTQAARQLGVCATVLKTTSRRFHVPRWPHRKIKSI 347
                          79**********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.62287367IPR003035RWP-RK domain
PfamPF020421.7E-20299347IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MADGHGEATE WEGPYDPLLV QDDFDDDVMY LLDMPAVVLD PAPLAVAQDN LLEWPATNYL  60
NNNSVDSRVP AHDAAVAGDR PCSTQYVGGG AGTSATASTS AAAAHDENAL LDCSGCQVLR  120
EVLHSNGLEA TKLCVHGASG VFYHATLDVY RINSEGMATA LTHQSYIDFR GRDYVWVKHY  180
LTDYAQRRAG GGYAVVHDSI SAFHDALCVS MNYYGGNADG GGDYCRGERA GAVGNGGGGD  240
QGQQELAGAA AEDVLIDQGD LPAAAGPSEP SAGNEQEQRE VRQQVGRSAL AIQRERASNL  300
QLSDLARYFH LPMTQAARQL GVCATVLKTT SRRFHVPRWP HRKIKSIDNH IDKLRRSGDN  360
GGAAAKREME RLIESRRKIY ADLLGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG058800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321666.11e-110uncharacterized protein LOC8084238
TrEMBLA0A2T7E6840.0A0A2T7E684_9POAL; Uncharacterized protein
STRINGPavir.Cb01863.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80552944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-13RWP-RK domain-containing protein