PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG007000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 237aa    MW: 23964.3 Da    PI: 10.5638
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG007000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05115137123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cgks++++  L  H  +H
  Pavir.3NG007000.1.p 115 YTCKFCGKSYTSHQALGGHVAKH 137
                          9***************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-4112138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.16E-6112139No hitNo description
SMARTSM003550.0084115137IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGSLLLSTGG REILSRAGAP PAGAVDGASS VLIDRASERA AGGGGAITSS TASGARPCLF  60
LFFFLAGTMG GPVYSSVHAS AAVHHPPPPY ADQAPQLPRP LVVPRRAADR AQREYTCKFC  120
GKSYTSHQAL GGHVAKHKSM QREAAAAAAA AAAGMAAMPI QDGDALRRAR GRGGRQRVAP  180
AQSQELVQAK AAAAVVGIVV VGVGGLLVII VIGQAAAGRE RRGGVHGRSQ WDCDCD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG007000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136