PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG479200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 213aa    MW: 23000 Da    PI: 9.0227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG479200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000246992123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         ++Cp Cg+ F +k  L  H ++ H
  Pavir.3KG479200.1.p 69 FSCPSCGREFQSKGALGGHWSRgH 92
                         89**************99999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2246992IPR007087Zinc finger, C2H2
PROSITE patternPS0002807192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSGEPRTLK VTGMLPEGSD KGFKGCTKNS PAERSLGGHM SCHRLAGMQS KSTPRPAVLG  60
MVPPGPKMFS CPSCGREFQS KGALGGHWSR GHCHPNVAGQ KAKKPEVSKI LSGVALNATR  120
RYYCKNCGEG FDTFQFIGWH KAKCNDVVQC GPEKYYYKYC GQDFPRSRSA SSHMGRCKYK  180
NAPHASSRHV LASDADDDAV DILDAEEANP QG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG479200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ca02435.1.p1e-158(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-06C2H2 family protein