PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG105200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 187aa    MW: 20115 Da    PI: 7.3284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG105200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000384365123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+++F++   L  H  +H
  Pavir.3KG105200.1.p 43 FVCKTCNRTFPSFQALGGHRASH 65
                         89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-841106No hitNo description
PfamPF139126.3E-134267IPR007087Zinc finger, C2H2
SMARTSM003550.0924365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7234370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PROSITE profilePS501578.64284114IPR007087Zinc finger, C2H2
PfamPF139121.9E-884108IPR007087Zinc finger, C2H2
SMARTSM003554.884106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKRFAVHESE MARVLMLMSH GQEPAVPLLP VAGRGDRAPD RVFVCKTCNR TFPSFQALGG  60
HRASHKKPRL DGDGDPSLDK PKLHGCSICG LEFAIGQALG GHMRRHRAMT GGMPPATTIV  120
VDKKPDVSII HDHDDGVKRG LWLDLNHPPC DDGCDAEAEC GHNATAGITF HQFLNTGTMA  180
VDCLGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG105200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809105.11e-127zinc finger protein ZAT12-like
TrEMBLA0A2S3H7E01e-126A0A2S3H7E0_9POAL; Uncharacterized protein
STRINGPavir.J05290.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-28C2H2 family protein