PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG068700.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Nin-like
Protein Properties Length: 341aa    MW: 36281.8 Da    PI: 4.604
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG068700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK38.42.4e-12295330338
               RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRq 38 
                          ++++l+dl++yF+lp+++AA+ Lgvc+TvLK + R+
  Pavir.3KG068700.3.p 295 SKLQLSDLARYFHLPMTQAARLLGVCATVLKTTSRR 330
                          689****************************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020422.4E-10297330IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADGHGEATD WEEGPYDPLL VQDDLDDVMH LLDMPAVVLD PAPLAVAQQD NLQEWPPANY  60
LNNDSVDSRA PTHDAAVAGD RPSTSSTQYA GAGTSATAGA HDENALLDCS GCHVLREVLH  120
SNGLEATKLC VHGNSGVFYH ATLEVYRINS EGMATALTHQ SYIDFRGLDY MWVKHYLTGY  180
AQQRAGGGYT VVHDSISAFH DALSVSMNYD GDGGNADGDD HRREGMEVAA AVGNGGCGGD  240
QDDGAVDAEQ PLIEPGDVPA TAGPSEPSAS NDHQERREVR KVGRSAIAIQ RQRASKLQLS  300
DLARYFHLPM TQAARLLGVC ATVLKTTSRR SKASTTILPS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG068700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321666.11e-83uncharacterized protein LOC8084238
TrEMBLA0A3L6T1V21e-158A0A3L6T1V2_PANMI; Uncharacterized protein
STRINGPavir.Ca00391.1.p0.0(Panicum virgatum)