PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG570000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 244aa    MW: 24336.5 Da    PI: 9.1981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG570000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006693115123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cgk++++   L  H  +H
  Pavir.2NG570000.1.p  93 YECSVCGKVYPSYQALGGHKTSH 115
                          99**********99998888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02293115IPR015880Zinc finger, C2H2-like
PfamPF139127.3E-1493117IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78593120IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-893115No hitNo description
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.22E-8150177No hitNo description
PfamPF139127.9E-12154179IPR007087Zinc finger, C2H2
SMARTSM003550.43155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSLAMSLDAG LDVSSKPPVP PPSPPRVDSW ARGGRRSKRR AGSPSGGGGA EQSEEEYLVL  60
SLLMLSRGVR GDAGDGGGVV AAAKGAAKAG QGYECSVCGK VYPSYQALGG HKTSHRKPPT  120
PTPTPAPQPA AAAAPAGDEA APLGGGVAHA EEKVHQCSLC LRTFPSGQAL GGHKRLHYEG  180
GGAAGADGIK ADKTKASAAQ ATSVLRDFDL NLAAAAAAAA TTAVDAESAL PEAKRVRMML  240
LVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG570000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432380.0AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802618.12e-85zinc finger protein 36-like
TrEMBLA0A3L6T8Z92e-93A0A3L6T8Z9_PANMI; Zinc finger protein 1-like
STRINGPavir.J16973.1.p8e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.13e-25C2H2 family protein